Welcome to TumorDecon’s documentation!

Getting Started:

• About TumorDecon
• Quickstart
  • Installation
  • Tutorial

Usage:

• Data Inputs
  • Reading in RNA Sequence Data
  • Reading in Signature Matrices and Gene Sets
  • Creating Custom Lists of Up/Down-Regulated Genes from Signature Matrix
• Signature Matrix Creation
• Running Digital Cytometry
  • Cibersort
  • DeconRNASeq
  • ssGSEA
  • SingScore
• Post-processing & Visualization

Indices and tables

• Index
• Module Index
• Search Page